OncoBind AI In-Silico ML Studio

Deep Learning Oncogenic Pocket Docking & Neoantigen Predictor

🔬 Target & Discovery Pipeline

ML READY

Binding Affinity Cutoff (Kd) 50 nM
Lower nM = tighter nanomolar target binding
Neural ADMET Toxicity Strictness High
Filters hERG cardiotoxicity & hepatotoxicity
Max SAScore (Synth Accessibility) 4.2
1.0 = trivial synthesis, 10.0 = intractable
Target: KRAS (G12D) Switch-II Pocket
Active Lead: CAND-8942 (ΔG: -11.4 kcal/mol)
Ligand Core H-Bond Donor/Acceptor Hydrophobic Pocket Contact Mutation Residue (G12D) Click/drag canvas to rotate & probe residue forces

📉 High-Throughput ML Funnel Attrition

In-Silico Time: 14.8 seconds
1. Virtual Pool
500,000
100% In-Silico
2. Pocket Docked
12,480
-97.5% Filtered
3. ΔG < -9 kcal
842
-93.2% Eliminated
4. Neural ADMET
64
-92.4% Tox Filtered
5. Validated Leads
6 Leads
Passed All Gates

🏆 Top In-Silico Lead Candidates

Select row to inspect binding geometry and pharmacological profile
Candidate ID SMILES / Structure Core Affinity Kd (nM) Docking ΔG (kcal/mol) Off-Target Tox Risk SAScore MHC Presentation Status

📑 Lead Drug Dossier: CAND-8942

Selectivity: 142x over Wild-Type
14.2 nM
Target Affinity Kd
-11.4 kcal
Binding Energy ΔG
2.8 / 10
Synth Accessibility
Predicted Mechanism: Allosteric switch-II covalent entrapment targeting Asp12 neo-residue in KRAS oncogene.
ADMET Safety Profile: 0.04 hERG cardiac inhibition risk, zero Ames mutagenicity alert, high oral bio-availability.
Resistance Mutation Risk: Low cross-reactivity with HRAS/NRAS wild-types (99.4% oncogene specificity).
💡 Biochemical Note: KRAS was historically labeled "undruggable" for four decades due to its ultra-high picomolar affinity for GTP and lack of deep surface pockets. Machine learning generative algorithms discovered transient cryptic pockets accessible during switch-II oscillation.

⏱️ AI vs. Traditional Oncology R&D Benchmark

Evidence Grounded
Discovery Timeline:
Traditional: ~12.0 Years
In-Silico ML: ~3.5 Years (-71%)
Preclinical & Phase Cost:
Traditional: $2.50 Billion
In-Silico ML: $620 Million (-75%)
Scientific Impact Summary: By replacing blind combinatorial wet-lab screening with transformer-based 3D structure predictions, generative molecular docking, and neural toxicity gates, researchers compress the initial 5-year lead optimization phase down to weeks while avoiding costly late-stage clinical trial attrition.
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